Kew Bioinformatics Documentation

This documentation is intended to help new users of the KewHPC system and as an ongoing reference. For further Help or if some thing is not covered here please contact Matt Clarke. Kew staff can also use the crop diverity cluster (gruffalo) at the James Hutton Institute. For help with accessing or using it thier documentation is here: help.cropdiversity.ac.uk

New users should first contact Matt Clarke to have their accouts activated.

KewHPC

• Sytem Description
• Getting Connected
• Transfer File
• Data Storage
• Running Jobs
• Loading Software
• Environment Management & Containers

Other Services

• Remote Access
• Shareing Data

Software Examples

• GATK
• HybPiper
• Ipyrad
• Python
• R
• Trimmomatic