Python
There are 2 version of python installed on KewHPC are 2.7.18 and 3.7.9
Installed Modules
Many commonly used python modules have been centrally installed. If you need any others ask Matt Clarke to install them centrally, or install to a personal local lib in /data/users_area.
Python 2.7 Modules
Package | Version |
---|---|
biopython | 1.76 |
mysql-connector-python | 8.0.21 |
numpy | 1.16.6 |
pip | 19.2.3 |
protobuf | 3.13.0 |
scipy | 1.2.3 |
setuptools | 41.2.0 |
six | 1.15.0 |
Python 3.7 Modules
Package | Version |
---|---|
amas | 1.0 |
appdirs | 1.4.4 |
attrs | 21.2.0 |
biopython | 1.78 |
certifi | 2020.6.20 |
cffi | 1.14.2 |
chardet | 3.0.4 |
cryptography | 3.1 |
cutadapt | 2.10 |
cycler | 0.10.0 |
demes | 0.1.2 |
distlib | 0.3.1 |
dnaio | 0.4.2 |
epydoc | 3.0.1 |
ete3 | 3.1.2 |
filelock | 3.0.12 |
GetOrganelle | 1.7.1 |
idna | 2.10 |
importlib-metadata | 3.7.2 |
joblib | 0.16.0 |
jsonschema | 3.2.0 |
kiwisolver | 1.2.0 |
matplotlib | 3.3.1 |
mpmath | 1.1.0 |
msprime | 1.0.1 |
mysql | 0.0.2 |
mysql-connector | 2.2.9 |
mysql-connector-python | 8.0.21 |
mysqlclient | 2.0.3 |
newick | 1.3.0 |
numpy | 1.19.2 |
pandas | 1.1.2 |
Pillow | 7.2.0 |
pip | 20.1.1 |
pipenv | 2020.11.15 |
protobuf | 3.13.0 |
psutil | 5.7.2 |
pycparser | 2.20 |
pyOpenSSL | 19.1.0 |
pyparsing | 2.4.7 |
pyrsistent | 0.18.0 |
python-dateutil | 2.8.1 |
pytz | 2020.1 |
radinitio | 1.1.1 |
requests | 2.24.0 |
ruamel.yaml | 0.17.10 |
ruamel.yaml.clib | 0.2.6 |
scikit-learn | 0.23.2 |
scipy | 1.5.2 |
seaborn | 0.11.0 |
setuptools | 47.1.0 |
six | 1.15.0 |
sklearn | 0.0 |
svgwrite | 1.4.1 |
sympy | 1.6.2 |
threadpoolctl | 2.1.0 |
tqdm | 4.48.2 |
TREESHRINK | 1.3.5 |
tskit | 0.3.6 |
typing-extensions | 3.7.4.3 |
urllib3 | 1.25.10 |
virtualenv | 20.4.2 |
virtualenv-clone | 0.5.4 |
xopen | 0.8.4 |
zipp | 3.4.1 |