ipyrad

ipyrad (Genome Analysis ToolKit) is an interactive assembly and analysis toolkit for restriction-site associated DNA (RAD-seq) and related data types. It has been installed using conda to manage the dependencies and environment variables.

How to use on KewHPC

To use ipyrad, first load the anaconda module

module load anaconda/2020.11

Then activate the conda environment. If you've not used conda before initialise it as described here

conda activate ipyrad

To deactivate the conda environment:

conda deactivate

To see how to use ipyrad:

ipyrad --help